Posts

September 14, 2014

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6:24 PM | Biospleen Helps Clean Blood to Prevent Sepsis
When a patient has sepsis Things can go downhill fast. A life-threatening condition in which bacteria or fungi multiply in a patient’s blood — sepsis is often too fast for antibiotics to […]

Kang JH, Super M, Yung CW, Cooper RM, Domansky K, Graveline AR, Mammoto T, Berthet JB, Tobin H, Cartwright MJ & Watters AL (2014). An extracorporeal blood-cleansing device for sepsis therapy., Nature medicine, PMID: http://www.ncbi.nlm.nih.gov/pubmed/25216635

Citation
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6:24 PM | Biospleen Helps Clean Blood to Prevent Sepsis
When a patient has sepsis Things can go downhill fast. A life-threatening condition in which bacteria or fungi multiply in a patient’s blood — sepsis is often too fast for antibiotics to […]

Kang JH, Super M, Yung CW, Cooper RM, Domansky K, Graveline AR, Mammoto T, Berthet JB, Tobin H, Cartwright MJ & Watters AL (2014). An extracorporeal blood-cleansing device for sepsis therapy., Nature medicine, PMID: http://www.ncbi.nlm.nih.gov/pubmed/25216635

Citation

September 12, 2014

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3:00 AM | Transcendental idealism and Post’s variant of the Church-Turing thesis
One of the exciting things in reading philosophy, its history in particular, is experiencing the tension between different schools of thought. This excitement turns to beauty if a clear synthesis emerges to reconcile the conflicting ideas. In the middle to late 18th century, as the Age of Enlightenment was giving way to the Romantic era, […]

Post, E.L. (1936). Finite combinatory processes -- formulation 1., Journal of Symbolic Logic, 1 (3) 103-105.

Citation

September 10, 2014

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6:26 PM | Multiple Sclerosis and Myelin loss
Multiple sclerosis (MS) is an unpredictable, often disabling disease of the central nervous system that disrupts the flow of information within the brain, and between the brain and body. The […]

Vasily L. Yarnykh, James D. Bowen, Alexey Samsonov, Pavle Repovic, Angeli Mayadev, Peiqing Qian, Beena Gangadharan, Bart P. Keogh, Kenneth R. Maravilla & Lily K. Jung Henson & (2014). Fast Whole-Brain Three-dimensional Macromolecular Proton Fraction Mapping in Multiple Sclerosis, Radiological Society of North America , Other:

Citation
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6:26 PM | Multiple Sclerosis and Myelin loss
Multiple sclerosis (MS) is an unpredictable, often disabling disease of the central nervous system that disrupts the flow of information within the brain, and between the brain and body. The […]

Vasily L. Yarnykh, James D. Bowen, Alexey Samsonov, Pavle Repovic, Angeli Mayadev, Peiqing Qian, Beena Gangadharan, Bart P. Keogh, Kenneth R. Maravilla & Lily K. Jung Henson & (2014). Fast Whole-Brain Three-dimensional Macromolecular Proton Fraction Mapping in Multiple Sclerosis, Radiological Society of North America , Other:

Citation
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6:26 PM | Multiple Sclerosis and Myelin loss
Multiple sclerosis (MS) is an unpredictable, often disabling disease of the central nervous system that disrupts the flow of information within the brain, and between the brain and body. The […]

Vasily L. Yarnykh, James D. Bowen, Alexey Samsonov, Pavle Repovic, Angeli Mayadev, Peiqing Qian, Beena Gangadharan, Bart P. Keogh, Kenneth R. Maravilla & Lily K. Jung Henson & (2014). Fast Whole-Brain Three-dimensional Macromolecular Proton Fraction Mapping in Multiple Sclerosis, Radiological Society of North America , Other:

Citation
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6:26 PM | Multiple Sclerosis and Myelin loss
Multiple sclerosis (MS) is an unpredictable, often disabling disease of the central nervous system that disrupts the flow of information within the brain, and between the brain and body. The […]

Vasily L. Yarnykh, James D. Bowen, Alexey Samsonov, Pavle Repovic, Angeli Mayadev, Peiqing Qian, Beena Gangadharan, Bart P. Keogh, Kenneth R. Maravilla & Lily K. Jung Henson & (2014). Fast Whole-Brain Three-dimensional Macromolecular Proton Fraction Mapping in Multiple Sclerosis, Radiological Society of North America , Other:

Citation
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4:30 PM | How to apply a fly eye Flies may be difficult to swat due to...
How to apply a fly eye Flies may be difficult to swat due to their all-seeing eyes, but scientists have now turned the tables and are using fly eyes for their own purposes. Flies’ eyes can capture light from a wide field of view — the better to spot looming flyswatters. But the reverse should also be true — shining light from behind a fly cornea will allow it to diffuse over a wide angle, a property that could be useful for light-emitting devices. Rather than trying to […]
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3:00 PM | Chemical engineering journal retracts paper with unknowing author
AIChemE’s website promises, “Subscribing to the AIChE Journal is like having access to nine topical journals in the field.” Without a subscription, though, you might miss out on some valuable topical information – like why a paper you want to cite has been retracted, something the Committee on Publication Ethics recommends be freely available. Here’s […]
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11:43 AM | Polarization Imaging Reveals New Views of Hunt Library, Insight into Exciting Field of Research
These two photos of the James B. Hunt, Jr. Library use a false-color technique to reveal a characteristic of light called polarization.

September 09, 2014

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4:14 PM | Afraid of Heights? Don't Buy a Cliff House
The home was developed to suit an adventurous clientele interested in unique coastal properties. Continue reading →
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3:00 PM | Fixing Urban Sinkholes: A Noisy Solution to a Dirty Problem
The pounding starts at 7:00 AM every morning outside my house here in Pittsburgh, and it’s been like that for 8 months now. Every weekday, whether it’s a backhoe ripping through asphalt, a jackhammer shredding up the concrete, or a buzz saw dicing the sidewalk, there is a plethora of noise that I wake up […]
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9:31 AM | Punning with the Pub in PubMed: Are there any decent NCBI puns left? #PubMedPuns
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka “PubManteaus”), and the pub-based wordplays are very common. [1,2] […]

Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database : the journal of biological databases and curation, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21245076

Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital library: bibliographic tools for the next generation web., PLoS computational biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/18974831

Hokamp K. & Wolfe K.H. PubCrawler: keeping up comfortably with PubMed and GenBank., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/15215341

Hokamp K. & Wolfe K. What's new in the library? What's new in GenBank? let PubCrawler tell you., Trends in genetics : TIG, PMID: http://www.ncbi.nlm.nih.gov/pubmed/10529811

Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) PMID: http://www.ncbi.nlm.nih.gov/pubmed/25186906

Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials Today, 11 (6) 48-48. DOI: http://dx.doi.org/10.1016/s1369-7021(08)70131-7

Kumar N., Berg A., Belhumeur P.N. & Nayar S. (2011). Describable Visual Attributes for Face Verification and Image Search., IEEE transactions on pattern analysis and machine intelligence, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21383395

Featherstone R. & Hersey D. (2010). The quest for full text: an in-depth examination of Pubget for medical searchers., Medical reference services quarterly, 29 (4) 307-319. PMID: http://www.ncbi.nlm.nih.gov/pubmed/21058175

Kim T.K., Wan-Sup Cho, Gun Hwan Ko, Sanghyuk Lee & Bo Kyeng Hou (2011). PubMine: An Ontology-Based Text Mining System for Deducing Relationships among Biological Entities, Interdisciplinary Bio Central, 3 (2) 1-6. DOI: http://dx.doi.org/10.4051/ibc.2011.3.2.0007

Douglas S.M., Montelione G.T. & Gerstein M. (2005). PubNet: a flexible system for visualizing literature derived networks., Genome biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/16168087

Yoo D., Xu I., Berardini T.Z., Rhee S.Y., Narayanasamy V. & Twigger S. (2006). PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature., Current protocols in bioinformatics , PMID: http://www.ncbi.nlm.nih.gov/pubmed/18428773

Seife C. (2002). Electronic publishing. DOE cites competition in killing PubSCIENCE., Science (New York, N.Y.), 297 (5585) 1257-1259. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12193762

Jensen M. (2003). Another loss in the privatisation war: PubScience., Lancet, 361 (9354) 274. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12559859

Dubuque E.M. (2011). Automating academic literature searches with RSS Feeds and Google Reader(™)., Behavior analysis in practice, 4 (1) PMID: http://www.ncbi.nlm.nih.gov/pubmed/22532905

McEntyre J.R., Ananiadou S., Andrews S., Black W.J., Boulderstone R., Buttery P., Chaplin D., Chevuru S., Cobley N. & Coleman L.A. & (2010). UKPMC: a full text article resource for the life sciences., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21062818

Citation
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9:31 AM | Punning with the Pub in PubMed: Are there any decent NCBI puns left? #PubMedPuns
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka “PubManteaus”), and the pub-based wordplays are very common. [1,2] […]

Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database : the journal of biological databases and curation, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21245076

Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital library: bibliographic tools for the next generation web., PLoS computational biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/18974831

Hokamp K. & Wolfe K.H. PubCrawler: keeping up comfortably with PubMed and GenBank., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/15215341

Hokamp K. & Wolfe K. What's new in the library? What's new in GenBank? let PubCrawler tell you., Trends in genetics : TIG, PMID: http://www.ncbi.nlm.nih.gov/pubmed/10529811

Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) PMID: http://www.ncbi.nlm.nih.gov/pubmed/25186906

Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials Today, 11 (6) 48-48. DOI: http://dx.doi.org/10.1016/s1369-7021(08)70131-7

Kumar N., Berg A., Belhumeur P.N. & Nayar S. (2011). Describable Visual Attributes for Face Verification and Image Search., IEEE transactions on pattern analysis and machine intelligence, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21383395

Featherstone R. & Hersey D. (2010). The quest for full text: an in-depth examination of Pubget for medical searchers., Medical reference services quarterly, 29 (4) 307-319. PMID: http://www.ncbi.nlm.nih.gov/pubmed/21058175

Kim T.K., Wan-Sup Cho, Gun Hwan Ko, Sanghyuk Lee & Bo Kyeng Hou (2011). PubMine: An Ontology-Based Text Mining System for Deducing Relationships among Biological Entities, Interdisciplinary Bio Central, 3 (2) 1-6. DOI: http://dx.doi.org/10.4051/ibc.2011.3.2.0007

Douglas S.M., Montelione G.T. & Gerstein M. (2005). PubNet: a flexible system for visualizing literature derived networks., Genome biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/16168087

Yoo D., Xu I., Berardini T.Z., Rhee S.Y., Narayanasamy V. & Twigger S. (2006). PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature., Current protocols in bioinformatics , PMID: http://www.ncbi.nlm.nih.gov/pubmed/18428773

Seife C. (2002). Electronic publishing. DOE cites competition in killing PubSCIENCE., Science (New York, N.Y.), 297 (5585) 1257-1259. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12193762

Jensen M. (2003). Another loss in the privatisation war: PubScience., Lancet, 361 (9354) 274. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12559859

Dubuque E.M. (2011). Automating academic literature searches with RSS Feeds and Google Reader(™)., Behavior analysis in practice, 4 (1) PMID: http://www.ncbi.nlm.nih.gov/pubmed/22532905

McEntyre J.R., Ananiadou S., Andrews S., Black W.J., Boulderstone R., Buttery P., Chaplin D., Chevuru S., Cobley N. & Coleman L.A. & (2010). UKPMC: a full text article resource for the life sciences., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21062818

Citation
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9:31 AM | Punning with the Pub in PubMed: Are there any decent NCBI puns left? #PubMedPuns
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka “PubManteaus”), and the pub-based wordplays are very common. [1,2] […]

Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database : the journal of biological databases and curation, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21245076

Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital library: bibliographic tools for the next generation web., PLoS computational biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/18974831

Hokamp K. & Wolfe K.H. PubCrawler: keeping up comfortably with PubMed and GenBank., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/15215341

Hokamp K. & Wolfe K. What's new in the library? What's new in GenBank? let PubCrawler tell you., Trends in genetics : TIG, PMID: http://www.ncbi.nlm.nih.gov/pubmed/10529811

Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) PMID: http://www.ncbi.nlm.nih.gov/pubmed/25186906

Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials Today, 11 (6) 48-48. DOI: http://dx.doi.org/10.1016/s1369-7021(08)70131-7

Kumar N., Berg A., Belhumeur P.N. & Nayar S. (2011). Describable Visual Attributes for Face Verification and Image Search., IEEE transactions on pattern analysis and machine intelligence, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21383395

Featherstone R. & Hersey D. (2010). The quest for full text: an in-depth examination of Pubget for medical searchers., Medical reference services quarterly, 29 (4) 307-319. PMID: http://www.ncbi.nlm.nih.gov/pubmed/21058175

Kim T.K., Wan-Sup Cho, Gun Hwan Ko, Sanghyuk Lee & Bo Kyeng Hou (2011). PubMine: An Ontology-Based Text Mining System for Deducing Relationships among Biological Entities, Interdisciplinary Bio Central, 3 (2) 1-6. DOI: http://dx.doi.org/10.4051/ibc.2011.3.2.0007

Douglas S.M., Montelione G.T. & Gerstein M. (2005). PubNet: a flexible system for visualizing literature derived networks., Genome biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/16168087

Yoo D., Xu I., Berardini T.Z., Rhee S.Y., Narayanasamy V. & Twigger S. (2006). PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature., Current protocols in bioinformatics , PMID: http://www.ncbi.nlm.nih.gov/pubmed/18428773

Seife C. (2002). Electronic publishing. DOE cites competition in killing PubSCIENCE., Science (New York, N.Y.), 297 (5585) 1257-1259. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12193762

Jensen M. (2003). Another loss in the privatisation war: PubScience., Lancet, 361 (9354) 274. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12559859

Dubuque E.M. (2011). Automating academic literature searches with RSS Feeds and Google Reader(™)., Behavior analysis in practice, 4 (1) PMID: http://www.ncbi.nlm.nih.gov/pubmed/22532905

McEntyre J.R., Ananiadou S., Andrews S., Black W.J., Boulderstone R., Buttery P., Chaplin D., Chevuru S., Cobley N. & Coleman L.A. & (2010). UKPMC: a full text article resource for the life sciences., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21062818

Citation
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9:31 AM | Punning with the Pub in PubMed: Are there any decent NCBI puns left? #PubMedPuns
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka “PubManteaus”), and the pub-based wordplays are very common. [1,2] […]

Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database : the journal of biological databases and curation, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21245076

Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital library: bibliographic tools for the next generation web., PLoS computational biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/18974831

Hokamp K. & Wolfe K.H. PubCrawler: keeping up comfortably with PubMed and GenBank., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/15215341

Hokamp K. & Wolfe K. What's new in the library? What's new in GenBank? let PubCrawler tell you., Trends in genetics : TIG, PMID: http://www.ncbi.nlm.nih.gov/pubmed/10529811

Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) PMID: http://www.ncbi.nlm.nih.gov/pubmed/25186906

Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials Today, 11 (6) 48-48. DOI: http://dx.doi.org/10.1016/s1369-7021(08)70131-7

Kumar N., Berg A., Belhumeur P.N. & Nayar S. (2011). Describable Visual Attributes for Face Verification and Image Search., IEEE transactions on pattern analysis and machine intelligence, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21383395

Featherstone R. & Hersey D. (2010). The quest for full text: an in-depth examination of Pubget for medical searchers., Medical reference services quarterly, 29 (4) 307-319. PMID: http://www.ncbi.nlm.nih.gov/pubmed/21058175

Kim T.K., Wan-Sup Cho, Gun Hwan Ko, Sanghyuk Lee & Bo Kyeng Hou (2011). PubMine: An Ontology-Based Text Mining System for Deducing Relationships among Biological Entities, Interdisciplinary Bio Central, 3 (2) 1-6. DOI: http://dx.doi.org/10.4051/ibc.2011.3.2.0007

Douglas S.M., Montelione G.T. & Gerstein M. (2005). PubNet: a flexible system for visualizing literature derived networks., Genome biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/16168087

Yoo D., Xu I., Berardini T.Z., Rhee S.Y., Narayanasamy V. & Twigger S. (2006). PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature., Current protocols in bioinformatics , PMID: http://www.ncbi.nlm.nih.gov/pubmed/18428773

Seife C. (2002). Electronic publishing. DOE cites competition in killing PubSCIENCE., Science (New York, N.Y.), 297 (5585) 1257-1259. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12193762

Jensen M. (2003). Another loss in the privatisation war: PubScience., Lancet, 361 (9354) 274. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12559859

Dubuque E.M. (2011). Automating academic literature searches with RSS Feeds and Google Reader(™)., Behavior analysis in practice, 4 (1) PMID: http://www.ncbi.nlm.nih.gov/pubmed/22532905

McEntyre J.R., Ananiadou S., Andrews S., Black W.J., Boulderstone R., Buttery P., Chaplin D., Chevuru S., Cobley N. & Coleman L.A. & (2010). UKPMC: a full text article resource for the life sciences., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21062818

Citation
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9:31 AM | Punning with the Pub in PubMed: Are there any decent NCBI puns left? #PubMedPuns
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka “PubManteaus”), and the pub-based wordplays are very common. [1,2] […]

Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database : the journal of biological databases and curation, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21245076

Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital library: bibliographic tools for the next generation web., PLoS computational biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/18974831

Hokamp K. & Wolfe K.H. PubCrawler: keeping up comfortably with PubMed and GenBank., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/15215341

Hokamp K. & Wolfe K. What's new in the library? What's new in GenBank? let PubCrawler tell you., Trends in genetics : TIG, PMID: http://www.ncbi.nlm.nih.gov/pubmed/10529811

Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) PMID: http://www.ncbi.nlm.nih.gov/pubmed/25186906

Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials Today, 11 (6) 48-48. DOI: http://dx.doi.org/10.1016/s1369-7021(08)70131-7

Kumar N., Berg A., Belhumeur P.N. & Nayar S. (2011). Describable Visual Attributes for Face Verification and Image Search., IEEE transactions on pattern analysis and machine intelligence, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21383395

Featherstone R. & Hersey D. (2010). The quest for full text: an in-depth examination of Pubget for medical searchers., Medical reference services quarterly, 29 (4) 307-319. PMID: http://www.ncbi.nlm.nih.gov/pubmed/21058175

Kim T.K., Wan-Sup Cho, Gun Hwan Ko, Sanghyuk Lee & Bo Kyeng Hou (2011). PubMine: An Ontology-Based Text Mining System for Deducing Relationships among Biological Entities, Interdisciplinary Bio Central, 3 (2) 1-6. DOI: http://dx.doi.org/10.4051/ibc.2011.3.2.0007

Douglas S.M., Montelione G.T. & Gerstein M. (2005). PubNet: a flexible system for visualizing literature derived networks., Genome biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/16168087

Yoo D., Xu I., Berardini T.Z., Rhee S.Y., Narayanasamy V. & Twigger S. (2006). PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature., Current protocols in bioinformatics , PMID: http://www.ncbi.nlm.nih.gov/pubmed/18428773

Seife C. (2002). Electronic publishing. DOE cites competition in killing PubSCIENCE., Science (New York, N.Y.), 297 (5585) 1257-1259. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12193762

Jensen M. (2003). Another loss in the privatisation war: PubScience., Lancet, 361 (9354) 274. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12559859

Dubuque E.M. (2011). Automating academic literature searches with RSS Feeds and Google Reader(™)., Behavior analysis in practice, 4 (1) PMID: http://www.ncbi.nlm.nih.gov/pubmed/22532905

McEntyre J.R., Ananiadou S., Andrews S., Black W.J., Boulderstone R., Buttery P., Chaplin D., Chevuru S., Cobley N. & Coleman L.A. & (2010). UKPMC: a full text article resource for the life sciences., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21062818

Citation
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9:31 AM | Punning with the Pub in PubMed: Are there any decent NCBI puns left? #PubMedPuns
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka “PubManteaus”), and the pub-based wordplays are very common. [1,2] […]

Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database : the journal of biological databases and curation, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21245076

Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital library: bibliographic tools for the next generation web., PLoS computational biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/18974831

Hokamp K. & Wolfe K.H. PubCrawler: keeping up comfortably with PubMed and GenBank., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/15215341

Hokamp K. & Wolfe K. What's new in the library? What's new in GenBank? let PubCrawler tell you., Trends in genetics : TIG, PMID: http://www.ncbi.nlm.nih.gov/pubmed/10529811

Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) PMID: http://www.ncbi.nlm.nih.gov/pubmed/25186906

Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials Today, 11 (6) 48-48. DOI: http://dx.doi.org/10.1016/s1369-7021(08)70131-7

Kumar N., Berg A., Belhumeur P.N. & Nayar S. (2011). Describable Visual Attributes for Face Verification and Image Search., IEEE transactions on pattern analysis and machine intelligence, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21383395

Featherstone R. & Hersey D. (2010). The quest for full text: an in-depth examination of Pubget for medical searchers., Medical reference services quarterly, 29 (4) 307-319. PMID: http://www.ncbi.nlm.nih.gov/pubmed/21058175

Kim T.K., Wan-Sup Cho, Gun Hwan Ko, Sanghyuk Lee & Bo Kyeng Hou (2011). PubMine: An Ontology-Based Text Mining System for Deducing Relationships among Biological Entities, Interdisciplinary Bio Central, 3 (2) 1-6. DOI: http://dx.doi.org/10.4051/ibc.2011.3.2.0007

Douglas S.M., Montelione G.T. & Gerstein M. (2005). PubNet: a flexible system for visualizing literature derived networks., Genome biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/16168087

Yoo D., Xu I., Berardini T.Z., Rhee S.Y., Narayanasamy V. & Twigger S. (2006). PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature., Current protocols in bioinformatics , PMID: http://www.ncbi.nlm.nih.gov/pubmed/18428773

Seife C. (2002). Electronic publishing. DOE cites competition in killing PubSCIENCE., Science (New York, N.Y.), 297 (5585) 1257-1259. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12193762

Jensen M. (2003). Another loss in the privatisation war: PubScience., Lancet, 361 (9354) 274. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12559859

Dubuque E.M. (2011). Automating academic literature searches with RSS Feeds and Google Reader(™)., Behavior analysis in practice, 4 (1) PMID: http://www.ncbi.nlm.nih.gov/pubmed/22532905

McEntyre J.R., Ananiadou S., Andrews S., Black W.J., Boulderstone R., Buttery P., Chaplin D., Chevuru S., Cobley N. & Coleman L.A. & (2010). UKPMC: a full text article resource for the life sciences., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21062818

Citation
+
9:31 AM | Punning with the Pub in PubMed: Are there any decent NCBI puns left? #PubMedPuns
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka “PubManteaus”), and the pub-based wordplays are very common. [1,2] […]

Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database : the journal of biological databases and curation, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21245076

Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital library: bibliographic tools for the next generation web., PLoS computational biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/18974831

Hokamp K. & Wolfe K.H. PubCrawler: keeping up comfortably with PubMed and GenBank., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/15215341

Hokamp K. & Wolfe K. What's new in the library? What's new in GenBank? let PubCrawler tell you., Trends in genetics : TIG, PMID: http://www.ncbi.nlm.nih.gov/pubmed/10529811

Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) PMID: http://www.ncbi.nlm.nih.gov/pubmed/25186906

Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials Today, 11 (6) 48-48. DOI: http://dx.doi.org/10.1016/s1369-7021(08)70131-7

Kumar N., Berg A., Belhumeur P.N. & Nayar S. (2011). Describable Visual Attributes for Face Verification and Image Search., IEEE transactions on pattern analysis and machine intelligence, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21383395

Featherstone R. & Hersey D. (2010). The quest for full text: an in-depth examination of Pubget for medical searchers., Medical reference services quarterly, 29 (4) 307-319. PMID: http://www.ncbi.nlm.nih.gov/pubmed/21058175

Kim T.K., Wan-Sup Cho, Gun Hwan Ko, Sanghyuk Lee & Bo Kyeng Hou (2011). PubMine: An Ontology-Based Text Mining System for Deducing Relationships among Biological Entities, Interdisciplinary Bio Central, 3 (2) 1-6. DOI: http://dx.doi.org/10.4051/ibc.2011.3.2.0007

Douglas S.M., Montelione G.T. & Gerstein M. (2005). PubNet: a flexible system for visualizing literature derived networks., Genome biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/16168087

Yoo D., Xu I., Berardini T.Z., Rhee S.Y., Narayanasamy V. & Twigger S. (2006). PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature., Current protocols in bioinformatics , PMID: http://www.ncbi.nlm.nih.gov/pubmed/18428773

Seife C. (2002). Electronic publishing. DOE cites competition in killing PubSCIENCE., Science (New York, N.Y.), 297 (5585) 1257-1259. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12193762

Jensen M. (2003). Another loss in the privatisation war: PubScience., Lancet, 361 (9354) 274. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12559859

Dubuque E.M. (2011). Automating academic literature searches with RSS Feeds and Google Reader(™)., Behavior analysis in practice, 4 (1) PMID: http://www.ncbi.nlm.nih.gov/pubmed/22532905

McEntyre J.R., Ananiadou S., Andrews S., Black W.J., Boulderstone R., Buttery P., Chaplin D., Chevuru S., Cobley N. & Coleman L.A. & (2010). UKPMC: a full text article resource for the life sciences., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21062818

Citation
+
9:31 AM | Punning with the Pub in PubMed: Are there any decent NCBI puns left? #PubMedPuns
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka “PubManteaus”), and the pub-based wordplays are very common. [1,2] […]

Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database : the journal of biological databases and curation, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21245076

Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital library: bibliographic tools for the next generation web., PLoS computational biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/18974831

Hokamp K. & Wolfe K.H. PubCrawler: keeping up comfortably with PubMed and GenBank., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/15215341

Hokamp K. & Wolfe K. What's new in the library? What's new in GenBank? let PubCrawler tell you., Trends in genetics : TIG, PMID: http://www.ncbi.nlm.nih.gov/pubmed/10529811

Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) PMID: http://www.ncbi.nlm.nih.gov/pubmed/25186906

Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials Today, 11 (6) 48-48. DOI: http://dx.doi.org/10.1016/s1369-7021(08)70131-7

Kumar N., Berg A., Belhumeur P.N. & Nayar S. (2011). Describable Visual Attributes for Face Verification and Image Search., IEEE transactions on pattern analysis and machine intelligence, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21383395

Featherstone R. & Hersey D. (2010). The quest for full text: an in-depth examination of Pubget for medical searchers., Medical reference services quarterly, 29 (4) 307-319. PMID: http://www.ncbi.nlm.nih.gov/pubmed/21058175

Kim T.K., Wan-Sup Cho, Gun Hwan Ko, Sanghyuk Lee & Bo Kyeng Hou (2011). PubMine: An Ontology-Based Text Mining System for Deducing Relationships among Biological Entities, Interdisciplinary Bio Central, 3 (2) 1-6. DOI: http://dx.doi.org/10.4051/ibc.2011.3.2.0007

Douglas S.M., Montelione G.T. & Gerstein M. (2005). PubNet: a flexible system for visualizing literature derived networks., Genome biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/16168087

Yoo D., Xu I., Berardini T.Z., Rhee S.Y., Narayanasamy V. & Twigger S. (2006). PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature., Current protocols in bioinformatics , PMID: http://www.ncbi.nlm.nih.gov/pubmed/18428773

Seife C. (2002). Electronic publishing. DOE cites competition in killing PubSCIENCE., Science (New York, N.Y.), 297 (5585) 1257-1259. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12193762

Jensen M. (2003). Another loss in the privatisation war: PubScience., Lancet, 361 (9354) 274. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12559859

Dubuque E.M. (2011). Automating academic literature searches with RSS Feeds and Google Reader(™)., Behavior analysis in practice, 4 (1) PMID: http://www.ncbi.nlm.nih.gov/pubmed/22532905

McEntyre J.R., Ananiadou S., Andrews S., Black W.J., Boulderstone R., Buttery P., Chaplin D., Chevuru S., Cobley N. & Coleman L.A. & (2010). UKPMC: a full text article resource for the life sciences., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21062818

Citation
+
9:31 AM | Punning with the Pub in PubMed: Are there any decent NCBI puns left? #PubMedPuns
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka “PubManteaus”), and the pub-based wordplays are very common. [1,2] […]

Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database : the journal of biological databases and curation, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21245076

Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital library: bibliographic tools for the next generation web., PLoS computational biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/18974831

Hokamp K. & Wolfe K.H. PubCrawler: keeping up comfortably with PubMed and GenBank., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/15215341

Hokamp K. & Wolfe K. What's new in the library? What's new in GenBank? let PubCrawler tell you., Trends in genetics : TIG, PMID: http://www.ncbi.nlm.nih.gov/pubmed/10529811

Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) PMID: http://www.ncbi.nlm.nih.gov/pubmed/25186906

Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials Today, 11 (6) 48-48. DOI: http://dx.doi.org/10.1016/s1369-7021(08)70131-7

Kumar N., Berg A., Belhumeur P.N. & Nayar S. (2011). Describable Visual Attributes for Face Verification and Image Search., IEEE transactions on pattern analysis and machine intelligence, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21383395

Featherstone R. & Hersey D. (2010). The quest for full text: an in-depth examination of Pubget for medical searchers., Medical reference services quarterly, 29 (4) 307-319. PMID: http://www.ncbi.nlm.nih.gov/pubmed/21058175

Kim T.K., Wan-Sup Cho, Gun Hwan Ko, Sanghyuk Lee & Bo Kyeng Hou (2011). PubMine: An Ontology-Based Text Mining System for Deducing Relationships among Biological Entities, Interdisciplinary Bio Central, 3 (2) 1-6. DOI: http://dx.doi.org/10.4051/ibc.2011.3.2.0007

Douglas S.M., Montelione G.T. & Gerstein M. (2005). PubNet: a flexible system for visualizing literature derived networks., Genome biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/16168087

Yoo D., Xu I., Berardini T.Z., Rhee S.Y., Narayanasamy V. & Twigger S. (2006). PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature., Current protocols in bioinformatics , PMID: http://www.ncbi.nlm.nih.gov/pubmed/18428773

Seife C. (2002). Electronic publishing. DOE cites competition in killing PubSCIENCE., Science (New York, N.Y.), 297 (5585) 1257-1259. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12193762

Jensen M. (2003). Another loss in the privatisation war: PubScience., Lancet, 361 (9354) 274. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12559859

Dubuque E.M. (2011). Automating academic literature searches with RSS Feeds and Google Reader(™)., Behavior analysis in practice, 4 (1) PMID: http://www.ncbi.nlm.nih.gov/pubmed/22532905

McEntyre J.R., Ananiadou S., Andrews S., Black W.J., Boulderstone R., Buttery P., Chaplin D., Chevuru S., Cobley N. & Coleman L.A. & (2010). UKPMC: a full text article resource for the life sciences., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21062818

Citation
+
9:31 AM | Punning with the Pub in PubMed: Are there any decent NCBI puns left? #PubMedPuns
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka “PubManteaus”), and the pub-based wordplays are very common. [1,2] […]

Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database : the journal of biological databases and curation, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21245076

Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital library: bibliographic tools for the next generation web., PLoS computational biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/18974831

Hokamp K. & Wolfe K.H. PubCrawler: keeping up comfortably with PubMed and GenBank., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/15215341

Hokamp K. & Wolfe K. What's new in the library? What's new in GenBank? let PubCrawler tell you., Trends in genetics : TIG, PMID: http://www.ncbi.nlm.nih.gov/pubmed/10529811

Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) PMID: http://www.ncbi.nlm.nih.gov/pubmed/25186906

Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials Today, 11 (6) 48-48. DOI: http://dx.doi.org/10.1016/s1369-7021(08)70131-7

Kumar N., Berg A., Belhumeur P.N. & Nayar S. (2011). Describable Visual Attributes for Face Verification and Image Search., IEEE transactions on pattern analysis and machine intelligence, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21383395

Featherstone R. & Hersey D. (2010). The quest for full text: an in-depth examination of Pubget for medical searchers., Medical reference services quarterly, 29 (4) 307-319. PMID: http://www.ncbi.nlm.nih.gov/pubmed/21058175

Kim T.K., Wan-Sup Cho, Gun Hwan Ko, Sanghyuk Lee & Bo Kyeng Hou (2011). PubMine: An Ontology-Based Text Mining System for Deducing Relationships among Biological Entities, Interdisciplinary Bio Central, 3 (2) 1-6. DOI: http://dx.doi.org/10.4051/ibc.2011.3.2.0007

Douglas S.M., Montelione G.T. & Gerstein M. (2005). PubNet: a flexible system for visualizing literature derived networks., Genome biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/16168087

Yoo D., Xu I., Berardini T.Z., Rhee S.Y., Narayanasamy V. & Twigger S. (2006). PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature., Current protocols in bioinformatics , PMID: http://www.ncbi.nlm.nih.gov/pubmed/18428773

Seife C. (2002). Electronic publishing. DOE cites competition in killing PubSCIENCE., Science (New York, N.Y.), 297 (5585) 1257-1259. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12193762

Jensen M. (2003). Another loss in the privatisation war: PubScience., Lancet, 361 (9354) 274. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12559859

Dubuque E.M. (2011). Automating academic literature searches with RSS Feeds and Google Reader(™)., Behavior analysis in practice, 4 (1) PMID: http://www.ncbi.nlm.nih.gov/pubmed/22532905

McEntyre J.R., Ananiadou S., Andrews S., Black W.J., Boulderstone R., Buttery P., Chaplin D., Chevuru S., Cobley N. & Coleman L.A. & (2010). UKPMC: a full text article resource for the life sciences., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21062818

Citation
+
9:31 AM | Punning with the Pub in PubMed: Are there any decent NCBI puns left? #PubMedPuns
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka “PubManteaus”), and the pub-based wordplays are very common. [1,2] […]

Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database : the journal of biological databases and curation, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21245076

Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital library: bibliographic tools for the next generation web., PLoS computational biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/18974831

Hokamp K. & Wolfe K.H. PubCrawler: keeping up comfortably with PubMed and GenBank., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/15215341

Hokamp K. & Wolfe K. What's new in the library? What's new in GenBank? let PubCrawler tell you., Trends in genetics : TIG, PMID: http://www.ncbi.nlm.nih.gov/pubmed/10529811

Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) PMID: http://www.ncbi.nlm.nih.gov/pubmed/25186906

Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials Today, 11 (6) 48-48. DOI: http://dx.doi.org/10.1016/s1369-7021(08)70131-7

Kumar N., Berg A., Belhumeur P.N. & Nayar S. (2011). Describable Visual Attributes for Face Verification and Image Search., IEEE transactions on pattern analysis and machine intelligence, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21383395

Featherstone R. & Hersey D. (2010). The quest for full text: an in-depth examination of Pubget for medical searchers., Medical reference services quarterly, 29 (4) 307-319. PMID: http://www.ncbi.nlm.nih.gov/pubmed/21058175

Kim T.K., Wan-Sup Cho, Gun Hwan Ko, Sanghyuk Lee & Bo Kyeng Hou (2011). PubMine: An Ontology-Based Text Mining System for Deducing Relationships among Biological Entities, Interdisciplinary Bio Central, 3 (2) 1-6. DOI: http://dx.doi.org/10.4051/ibc.2011.3.2.0007

Douglas S.M., Montelione G.T. & Gerstein M. (2005). PubNet: a flexible system for visualizing literature derived networks., Genome biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/16168087

Yoo D., Xu I., Berardini T.Z., Rhee S.Y., Narayanasamy V. & Twigger S. (2006). PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature., Current protocols in bioinformatics , PMID: http://www.ncbi.nlm.nih.gov/pubmed/18428773

Seife C. (2002). Electronic publishing. DOE cites competition in killing PubSCIENCE., Science (New York, N.Y.), 297 (5585) 1257-1259. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12193762

Jensen M. (2003). Another loss in the privatisation war: PubScience., Lancet, 361 (9354) 274. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12559859

Dubuque E.M. (2011). Automating academic literature searches with RSS Feeds and Google Reader(™)., Behavior analysis in practice, 4 (1) PMID: http://www.ncbi.nlm.nih.gov/pubmed/22532905

McEntyre J.R., Ananiadou S., Andrews S., Black W.J., Boulderstone R., Buttery P., Chaplin D., Chevuru S., Cobley N. & Coleman L.A. & (2010). UKPMC: a full text article resource for the life sciences., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21062818

Citation
+
9:31 AM | Punning with the Pub in PubMed: Are there any decent NCBI puns left? #PubMedPuns
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka “PubManteaus”), and the pub-based wordplays are very common. [1,2] […]

Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database : the journal of biological databases and curation, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21245076

Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital library: bibliographic tools for the next generation web., PLoS computational biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/18974831

Hokamp K. & Wolfe K.H. PubCrawler: keeping up comfortably with PubMed and GenBank., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/15215341

Hokamp K. & Wolfe K. What's new in the library? What's new in GenBank? let PubCrawler tell you., Trends in genetics : TIG, PMID: http://www.ncbi.nlm.nih.gov/pubmed/10529811

Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) PMID: http://www.ncbi.nlm.nih.gov/pubmed/25186906

Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials Today, 11 (6) 48-48. DOI: http://dx.doi.org/10.1016/s1369-7021(08)70131-7

Kumar N., Berg A., Belhumeur P.N. & Nayar S. (2011). Describable Visual Attributes for Face Verification and Image Search., IEEE transactions on pattern analysis and machine intelligence, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21383395

Featherstone R. & Hersey D. (2010). The quest for full text: an in-depth examination of Pubget for medical searchers., Medical reference services quarterly, 29 (4) 307-319. PMID: http://www.ncbi.nlm.nih.gov/pubmed/21058175

Kim T.K., Wan-Sup Cho, Gun Hwan Ko, Sanghyuk Lee & Bo Kyeng Hou (2011). PubMine: An Ontology-Based Text Mining System for Deducing Relationships among Biological Entities, Interdisciplinary Bio Central, 3 (2) 1-6. DOI: http://dx.doi.org/10.4051/ibc.2011.3.2.0007

Douglas S.M., Montelione G.T. & Gerstein M. (2005). PubNet: a flexible system for visualizing literature derived networks., Genome biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/16168087

Yoo D., Xu I., Berardini T.Z., Rhee S.Y., Narayanasamy V. & Twigger S. (2006). PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature., Current protocols in bioinformatics , PMID: http://www.ncbi.nlm.nih.gov/pubmed/18428773

Seife C. (2002). Electronic publishing. DOE cites competition in killing PubSCIENCE., Science (New York, N.Y.), 297 (5585) 1257-1259. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12193762

Jensen M. (2003). Another loss in the privatisation war: PubScience., Lancet, 361 (9354) 274. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12559859

Dubuque E.M. (2011). Automating academic literature searches with RSS Feeds and Google Reader(™)., Behavior analysis in practice, 4 (1) PMID: http://www.ncbi.nlm.nih.gov/pubmed/22532905

McEntyre J.R., Ananiadou S., Andrews S., Black W.J., Boulderstone R., Buttery P., Chaplin D., Chevuru S., Cobley N. & Coleman L.A. & (2010). UKPMC: a full text article resource for the life sciences., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21062818

Citation
+
9:31 AM | Punning with the Pub in PubMed: Are there any decent NCBI puns left? #PubMedPuns
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka “PubManteaus”), and the pub-based wordplays are very common. [1,2] […]

Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database : the journal of biological databases and curation, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21245076

Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital library: bibliographic tools for the next generation web., PLoS computational biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/18974831

Hokamp K. & Wolfe K.H. PubCrawler: keeping up comfortably with PubMed and GenBank., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/15215341

Hokamp K. & Wolfe K. What's new in the library? What's new in GenBank? let PubCrawler tell you., Trends in genetics : TIG, PMID: http://www.ncbi.nlm.nih.gov/pubmed/10529811

Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) PMID: http://www.ncbi.nlm.nih.gov/pubmed/25186906

Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials Today, 11 (6) 48-48. DOI: http://dx.doi.org/10.1016/s1369-7021(08)70131-7

Kumar N., Berg A., Belhumeur P.N. & Nayar S. (2011). Describable Visual Attributes for Face Verification and Image Search., IEEE transactions on pattern analysis and machine intelligence, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21383395

Featherstone R. & Hersey D. (2010). The quest for full text: an in-depth examination of Pubget for medical searchers., Medical reference services quarterly, 29 (4) 307-319. PMID: http://www.ncbi.nlm.nih.gov/pubmed/21058175

Kim T.K., Wan-Sup Cho, Gun Hwan Ko, Sanghyuk Lee & Bo Kyeng Hou (2011). PubMine: An Ontology-Based Text Mining System for Deducing Relationships among Biological Entities, Interdisciplinary Bio Central, 3 (2) 1-6. DOI: http://dx.doi.org/10.4051/ibc.2011.3.2.0007

Douglas S.M., Montelione G.T. & Gerstein M. (2005). PubNet: a flexible system for visualizing literature derived networks., Genome biology, PMID: http://www.ncbi.nlm.nih.gov/pubmed/16168087

Yoo D., Xu I., Berardini T.Z., Rhee S.Y., Narayanasamy V. & Twigger S. (2006). PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature., Current protocols in bioinformatics , PMID: http://www.ncbi.nlm.nih.gov/pubmed/18428773

Seife C. (2002). Electronic publishing. DOE cites competition in killing PubSCIENCE., Science (New York, N.Y.), 297 (5585) 1257-1259. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12193762

Jensen M. (2003). Another loss in the privatisation war: PubScience., Lancet, 361 (9354) 274. PMID: http://www.ncbi.nlm.nih.gov/pubmed/12559859

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McEntyre J.R., Ananiadou S., Andrews S., Black W.J., Boulderstone R., Buttery P., Chaplin D., Chevuru S., Cobley N. & Coleman L.A. & (2010). UKPMC: a full text article resource for the life sciences., Nucleic acids research, PMID: http://www.ncbi.nlm.nih.gov/pubmed/21062818

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September 08, 2014

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3:40 AM | Women in Science
      Summer is gone and Fall has finally returned. The leaves are changing colour, sweaters will be back out and worn in no time, and Future Science Leaders is back in session. Most people know Future Science Leaders as an afterschool program which challenges and inspires youth, but I see it as a […]

September 05, 2014

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5:56 PM | Artificial Cells: They’re alive!!
Frankenstein’s monster was (in the story) a scientific marvel that could not be matched. Growing up with the story, the idea of creating life where there was none was a […]

Keber, F., Loiseau, E., Sanchez, T., DeCamp, S., Giomi, L., Bowick, M., Marchetti, M., Dogic, Z. & Bausch, A. (2014). Topology and dynamics of active nematic vesicles, Science, 345 (6201) 1135-1139. DOI: 10.1126/science.1254784

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5:56 PM | Artificial Cells: They’re alive!!
Frankenstein’s monster was (in the story) a scientific marvel that could not be matched. Growing up with the story, the idea of creating life where there was none was a […]

Keber, F., Loiseau, E., Sanchez, T., DeCamp, S., Giomi, L., Bowick, M., Marchetti, M., Dogic, Z. & Bausch, A. (2014). Topology and dynamics of active nematic vesicles, Science, 345 (6201) 1135-1139. DOI: 10.1126/science.1254784

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12:09 AM | How sex-engineered prawns can fight deadly parasites
Worms. Having them can be as embarrassing as it is irritating, but for most, the worst they can do is force us to take a frantic and furtive scratch when we’re sure nobody’s looking. But sadly, some parasitic worms can cause far more problems: Schistosoma (blood flukes) can infect the urinary tract and intestines, with unpleasant…

Savaya Alkalay, A., Rosen, O., Sokolow, S., Faye, Y., Faye, D., Aflalo, E., Jouanard, N., Zilberg, D., Huttinger, E. & Sagi, A. & (2014). The Prawn Macrobrachium vollenhovenii in the Senegal River Basin: Towards Sustainable Restocking of All-Male Populations for Biological Control of Schistosomiasis, PLoS Neglected Tropical Diseases, 8 (8) DOI: 10.1371/journal.pntd.0003060

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September 04, 2014

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2:46 AM | Fungible funding
I was reading a discussion the other day on funding sources when it occurred to me that I’ve made a big switch on the topic.  I used to think that industry funded research was *always* bad, *always* biased. Nope. I guess being in engineering has changed my view considerably.  A lot of engineering work is […]
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